What to know
This module introduces two public repositories for sharing SARS-CoV-2 genome sequence data—Global Initiative on Sharing All Influenza Data (GISAID) and the National Center for Biotechnology Information (NCBI)—and provides basic tips for searching them.
![3.5-thumb thumbnail for module 3.5](/advanced-molecular-detection/images/training/3.5-thumb.jpg)
Overview
Presenter: Michael Weigand, PhD | Bioinformatician, CDC
Download Presentation Slides [PDF - 21 slides]
Further Reading
- Global Initiative on Sharing All Influenza Data (GISAID).
- National Center for Biotechnology Information (NCBI) SARS-CoV-2 resources.
- NCBI Virus SARS-CoV-2 data dashboard.
- NCBI Umbrella BioProject of US sequencing efforts.
- NCBI GenBank submission.
- NCBI SRA submission.
- Public Health Alliance for Genomic Epidemiology (PHA4GE) resources.
- Public Health Alliance for Genomic Epidemiology (PHA4GE) protocols.
- SARS-CoV-2 GISAID submission protocol.
- SARS-CoV-2 GenBank submission protocol.
- SARS-CoV-2 SRA submission protocol.
Additional Resources
- Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group. Austin, et al. Wellcome Open Research, updated 2021.
- Shortcomings of SARS-CoV-2 genomic metadata. Gozashti and Corbett-Detig. BMC Res Notes, 2021.