What to know
This module demonstrates how to navigate through Nextstrain phylogenetic trees using various functionalities such as filtering, zooming, coloring and labeling to further analyze SARS-CoV-2 genomic epidemiological data.
![3.4-thumb thumbnail for module 3.4](/advanced-molecular-detection/images/training/3.4-thumb.jpg)
Overview
Presenter: Krisandra Allen, MPH, MB(ASCP)CM | Molecular Epidemiologist Washington State Department of Health
Download Presentation Slides [PDF - 19 slides]
Nextstrain provides a list of SARS-CoV-2 resources and publicly available analyses to help explore their tool.
Hands-on Example
- Phylogenetic tree.
- Metadata table. Module 3.4 Demo Meta Data [CSV, 1KB] Note: Please first convert ToolkitModule_3.4-demoData.csv into a tsv file, according to the instructions here.