Module 3.2 – Getting started with MicrobeTrace

What to know

This module introduces MicrobeTrace, an interactive tool for transmission network analysis using SARS-CoV-2 sequencing and contact tracing data.

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Overview

Presenter: Ellsworth Campbell, MS | Computational Biologist, CDC
Download Presentation Slides [PDF - 31 slides]

Updated 9-13-21 – New slides 22 and 23 include additional information on MicrobeTrace settings for Nextstrain trees.

Further Reading

  1. MicrobeTrace overview. CDC, 2021.

Additional Resources

  1. MicrobeTrace documentation. CDC, updated 2020.
  2. MicrobeTrace: Retooling molecular epidemiology for rapid public health response. Campbell, et al. bioRxiv, 2020.
  3. Participation in fraternity and sorority activities and the spread of COVID-19 among residential university communities — Arkansas, August 21–September 5, 2020. Vang, et al. MMWR, 2021.
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Content Source:
National Center for Emerging and Zoonotic Infectious Diseases (NCEZID)