Module 2.1 – SARS-CoV-2 sequencing in Arizona

What to know

This case study from Arizona provides insight into how SARS-CoV-2 sequencing is used to describe the genomic epidemiology of a state and as an investigative tool in COVID-19 outbreak settings.

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Overview

Presenter: Hayley Yaglom, MS, MPH | Genomic Epidemiologist, Translational Genomics Research Institute
View Presentation [Full Version] | [Short Version]

You can read more about this work: An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

Further Reading

  1. An early pandemic analysis of SARS-CoV-2 population structure and dynamics in Arizona. Ladner, et al. mBio, 2020.
  2. AZ-Strain: Genomic epidemiology of SARS-CoV-2 in Arizona. Arizona COVID Genomics Union (ACGU).

Additional Resources

  1. Communicating results using narratives.external iconNextstrain.org (documentation).
  2. Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States.external iconFauver, et al. Cell, 2020.
  3. Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management.external iconPage, et al. Microb Genom, 2021.
  4. Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State.external iconMueller, et al. Sci Transl Med, 2021.
  5. Revealing fine-scale spatiotemporal differences in SARS-CoV-2 introduction and spread.external iconMoreno, et al. Nat Commun, 2020.
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Content Source:
National Center for Emerging and Zoonotic Infectious Diseases (NCEZID)